More segment-anything again. (#764)

* More segment-anything again.

* Transformer block forward.

* Two-ways transformer.

* Position embeddings.

* Sketch the prompt encoder.

* More prompt-encoder.

* More prompt-encoder.

* Add the main sam module.

* Embed the transformer.

* And hook the transformer forward step.

* Build the model.

* Handle the global attn indexes.

* Get the model to load.
This commit is contained in:
Laurent Mazare
2023-09-07 13:06:55 +02:00
committed by GitHub
parent 8c991df394
commit 7b50f3e106
6 changed files with 454 additions and 20 deletions

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@ -8,9 +8,11 @@ extern crate intel_mkl_src;
#[cfg(feature = "accelerate")]
extern crate accelerate_src;
mod model_image_encoder;
mod model_mask_decoder;
mod model_transformer;
pub mod model_image_encoder;
pub mod model_mask_decoder;
pub mod model_prompt_encoder;
pub mod model_sam;
pub mod model_transformer;
use candle::{DType, IndexOp, Result, Tensor, D};
use candle_nn::{layer_norm, LayerNorm, Linear, Module, VarBuilder};
@ -82,7 +84,7 @@ impl Module for MlpBlock {
#[derive(Parser)]
struct Args {
#[arg(long)]
model: Option<String>,
model: String,
#[arg(long)]
image: String,
@ -95,10 +97,15 @@ struct Args {
pub fn main() -> anyhow::Result<()> {
let args = Args::parse();
let _device = candle_examples::device(args.cpu)?;
let device = candle_examples::device(args.cpu)?;
let image = candle_examples::imagenet::load_image224(args.image)?;
let image = candle_examples::imagenet::load_image224(args.image)?.to_device(&device);
println!("loaded image {image:?}");
let weights = unsafe { candle::safetensors::MmapedFile::new(args.model)? };
let weights = weights.deserialize()?;
let vb = VarBuilder::from_safetensors(vec![weights], DType::F32, &device);
let _sam = model_sam::Sam::new(768, 12, 12, &[2, 5, 8, 11], vb)?; // sam_vit_b
Ok(())
}

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@ -47,7 +47,7 @@ impl Attention {
num_heads: usize,
qkv_bias: bool,
use_rel_pos: bool,
window_size: usize,
input_size: (usize, usize),
vb: VarBuilder,
) -> Result<Self> {
let qkv = crate::linear(vb.pp("qkv"), dim, dim * 3, qkv_bias)?;
@ -55,8 +55,8 @@ impl Attention {
let head_dim = dim / num_heads;
let scale = 1. / (head_dim as f64).sqrt();
let rel_pos_hw = if use_rel_pos {
let h = vb.get((2 * window_size - 1, head_dim), "rel_pos_h")?;
let w = vb.get((2 * window_size - 1, head_dim), "rel_pos_w")?;
let h = vb.get((2 * input_size.0 - 1, head_dim), "rel_pos_h")?;
let w = vb.get((2 * input_size.1 - 1, head_dim), "rel_pos_w")?;
Some((h, w))
} else {
None
@ -114,16 +114,22 @@ impl Block {
qkv_bias: bool,
use_rel_pos: bool,
window_size: usize,
input_size: (usize, usize),
vb: VarBuilder,
) -> Result<Self> {
let norm1 = layer_norm(dim, 1e-5, vb.pp("norm1"))?;
let norm2 = layer_norm(dim, 1e-5, vb.pp("norm2"))?;
let input_size_attn = if window_size == 0 {
input_size
} else {
(window_size, window_size)
};
let attn = Attention::new(
dim,
num_heads,
qkv_bias,
use_rel_pos,
window_size,
input_size_attn,
vb.pp("attn"),
)?;
let mlp = crate::MlpBlock::new(dim, dim * 4, vb.pp("mlp"))?;
@ -154,7 +160,7 @@ impl Module for Block {
}
#[derive(Debug)]
struct ImageEncoderViT {
pub struct ImageEncoderViT {
img_size: usize,
patch_embed: PatchEmbed,
blocks: Vec<Block>,
@ -167,7 +173,7 @@ struct ImageEncoderViT {
impl ImageEncoderViT {
#[allow(clippy::too_many_arguments)]
fn new(
pub fn new(
img_size: usize,
patch_size: usize,
in_chans: usize,
@ -179,6 +185,7 @@ impl ImageEncoderViT {
use_rel_pos: bool,
use_abs_pos: bool,
window_size: usize,
global_attn_indexes: &[usize],
vb: VarBuilder,
) -> Result<Self> {
let patch_embed = PatchEmbed::new(
@ -192,12 +199,18 @@ impl ImageEncoderViT {
let mut blocks = Vec::with_capacity(depth);
let vb_b = vb.pp("blocks");
for i in 0..depth {
let window_size = if global_attn_indexes.contains(&i) {
0
} else {
window_size
};
let block = Block::new(
embed_dim,
num_heads,
qkv_bias,
use_rel_pos,
window_size,
(img_size / patch_size, img_size / patch_size),
vb_b.pp(i),
)?;
blocks.push(block)

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@ -1,6 +1,8 @@
use candle::{DType, IndexOp, Result, Tensor, D};
use candle_nn::{layer_norm, LayerNorm, Linear, Module, VarBuilder};
use crate::model_transformer::TwoWayTransformer;
#[derive(Debug)]
struct MlpMaskDecoder {
layers: Vec<Linear>,
@ -53,7 +55,7 @@ impl Module for MlpMaskDecoder {
}
#[derive(Debug)]
struct MaskDecoder {
pub struct MaskDecoder {
iou_token: candle_nn::Embedding,
mask_tokens: candle_nn::Embedding,
iou_prediction_head: MlpMaskDecoder,
@ -62,17 +64,18 @@ struct MaskDecoder {
output_upscaling_conv2: candle_nn::ConvTranspose2d,
num_mask_tokens: usize,
output_hypernetworks_mlps: Vec<MlpMaskDecoder>,
transformer: TwoWayTransformer,
}
impl MaskDecoder {
fn new(
pub fn new(
transformer_dim: usize,
num_multimask_outputs: usize,
iou_head_depth: usize,
iou_head_hidden_dim: usize,
vb: VarBuilder,
) -> Result<Self> {
let num_mask_tokens = num_multimask_outputs - 1;
let num_mask_tokens = num_multimask_outputs + 1;
let iou_prediction_head = MlpMaskDecoder::new(
transformer_dim,
iou_head_hidden_dim,
@ -117,6 +120,13 @@ impl MaskDecoder {
)?;
output_hypernetworks_mlps.push(mlp)
}
let transformer = TwoWayTransformer::new(
/* depth */ 2,
/* embedding_dim */ transformer_dim,
/* num_heads */ 8,
/* mlp_dim */ 2048,
vb.pp("transformer"),
)?;
Ok(Self {
iou_token,
mask_tokens,
@ -126,6 +136,7 @@ impl MaskDecoder {
output_upscaling_conv2,
num_mask_tokens,
output_hypernetworks_mlps,
transformer,
})
}
@ -182,7 +193,7 @@ impl MaskDecoder {
let (b, c, h, w) = src.dims4()?;
// Run the transformer
let (hs, src) = run_transformer(&src, &pos_src, &tokens)?;
let (hs, src) = self.transformer.forward(&src, &pos_src, &tokens)?;
let iou_token_out = hs.i((.., 0))?;
let mask_tokens_out = hs.i((.., 1, 1 + self.num_mask_tokens))?;
@ -216,7 +227,3 @@ impl MaskDecoder {
fn repeat_interleave(_img: &Tensor, _repeats: usize, _dim: usize) -> Result<Tensor> {
todo!()
}
fn run_transformer(_src: &Tensor, _pos: &Tensor, _tokens: &Tensor) -> Result<(Tensor, Tensor)> {
todo!()
}

View File

@ -0,0 +1,192 @@
use candle::{DType, IndexOp, Result, Tensor, D};
use candle_nn::{layer_norm, LayerNorm, Linear, Module, VarBuilder};
#[derive(Debug)]
struct PostionEmbeddingRandom {
positional_encoding_gaussian_matrix: Tensor,
}
impl PostionEmbeddingRandom {
fn new(num_pos_feats: usize, vb: VarBuilder) -> Result<Self> {
let positional_encoding_gaussian_matrix =
vb.get((2, num_pos_feats), "positional_encoding_gaussian_matrix")?;
Ok(Self {
positional_encoding_gaussian_matrix,
})
}
fn pe_encoding(&self, coords: &Tensor) -> Result<Tensor> {
let coords = coords.affine(2., -1.)?;
let coords = coords.matmul(&self.positional_encoding_gaussian_matrix)?;
let coords = (coords * (2. * std::f64::consts::PI))?;
Tensor::cat(&[coords.sin()?, coords.cos()?], D::Minus1)
}
fn forward(&self, h: usize, w: usize) -> Result<Tensor> {
let device = self.positional_encoding_gaussian_matrix.device();
let grid = Tensor::ones((h, w), DType::F32, device)?;
// TODO: cumsum
let x_embed = (&grid - 0.5)?;
// TODO: cumsum
let y_embed = (&grid - 0.5)?;
let x_embed = (x_embed / w as f64)?;
let y_embed = (y_embed / h as f64)?;
let coords = Tensor::stack(&[&x_embed, &y_embed], D::Minus1)?;
self.pe_encoding(&coords)?.permute((2, 0, 1))
}
fn forward_with_coords(
&self,
coords_input: &Tensor,
image_size: (usize, usize),
) -> Result<Tensor> {
let coords0 = (coords_input.narrow(D::Minus1, 0, 1)? / image_size.1 as f64)?;
let coords1 = (coords_input.narrow(D::Minus1, 1, 1)? / image_size.0 as f64)?;
let c = coords_input.dim(D::Minus1)?;
let coords_rest = coords_input.narrow(D::Minus1, 2, c - 2)?;
let coords = Tensor::cat(&[&coords0, &coords1, &coords_rest], D::Minus1)?;
self.pe_encoding(&coords)
}
}
#[derive(Debug)]
pub struct PromptEncoder {
pe_layer: PostionEmbeddingRandom,
point_embeddings: Vec<candle_nn::Embedding>,
not_a_point_embed: candle_nn::Embedding,
mask_downscaling_conv1: candle_nn::Conv2d,
mask_downscaling_ln1: LayerNorm,
mask_downscaling_conv2: candle_nn::Conv2d,
mask_downscaling_ln2: LayerNorm,
mask_downscaling_conv3: candle_nn::Conv2d,
no_mask_embed: candle_nn::Embedding,
image_embedding_size: (usize, usize),
input_image_size: (usize, usize),
}
impl PromptEncoder {
pub fn new(
embed_dim: usize,
image_embedding_size: (usize, usize),
input_image_size: (usize, usize),
mask_in_chans: usize,
vb: VarBuilder,
) -> Result<Self> {
let num_points_embeddings = 4;
let pe_layer = PostionEmbeddingRandom::new(embed_dim / 2, vb.pp("pe_layer"))?;
let not_a_point_embed = candle_nn::embedding(1, embed_dim, vb.pp("not_a_point_embed"))?;
let no_mask_embed = candle_nn::embedding(1, embed_dim, vb.pp("no_mask_embed"))?;
let cfg = candle_nn::Conv2dConfig {
stride: 2,
..Default::default()
};
let mask_downscaling_conv1 =
candle_nn::conv2d(1, mask_in_chans / 4, 2, cfg, vb.pp("mask_downscaling.0"))?;
let mask_downscaling_conv2 = candle_nn::conv2d(
mask_in_chans / 4,
mask_in_chans,
2,
cfg,
vb.pp("mask_downscaling.3"),
)?;
let mask_downscaling_conv3 = candle_nn::conv2d(
mask_in_chans,
embed_dim,
1,
Default::default(),
vb.pp("mask_downscaling.6"),
)?;
let mask_downscaling_ln1 =
layer_norm(mask_in_chans / 4, 1e-6, vb.pp("mask_downscaling.1"))?;
let mask_downscaling_ln2 = layer_norm(mask_in_chans, 1e-6, vb.pp("mask_downscaling.4"))?;
let mut point_embeddings = Vec::with_capacity(num_points_embeddings);
let vb_e = vb.pp("point_embeddings");
for i in 0..num_points_embeddings {
let emb = candle_nn::embedding(1, embed_dim, vb_e.pp(i))?;
point_embeddings.push(emb)
}
Ok(Self {
pe_layer,
point_embeddings,
not_a_point_embed,
mask_downscaling_conv1,
mask_downscaling_ln1,
mask_downscaling_conv2,
mask_downscaling_ln2,
mask_downscaling_conv3,
no_mask_embed,
image_embedding_size,
input_image_size,
})
}
fn embed_masks(&self, masks: &Tensor) -> Result<Tensor> {
masks
.apply(&self.mask_downscaling_conv1)?
.apply(&self.mask_downscaling_ln1)?
.gelu()?
.apply(&self.mask_downscaling_conv2)?
.apply(&self.mask_downscaling_ln2)?
.gelu()?
.apply(&self.mask_downscaling_conv3)
}
fn embed_points(&self, points: &Tensor, labels: &Tensor, pad: bool) -> Result<Tensor> {
let points = (points + 0.5)?;
let points = if pad { todo!() } else { points };
let point_embedding = self
.pe_layer
.forward_with_coords(&points, self.input_image_size)?;
// TODO: tweak based on labels.
Ok(point_embedding)
}
fn embed_boxes(&self, boxes: &Tensor) -> Result<Tensor> {
let boxes = (boxes + 0.5)?;
let coords = boxes.reshape((boxes.elem_count() / 4, 2, 2))?;
let corner_embedding = self
.pe_layer
.forward_with_coords(&coords, self.input_image_size)?;
let ce1 = corner_embedding.i((.., 0))?;
let ce2 = corner_embedding.i((.., 1))?;
let ce1 = (ce1 + self.point_embeddings[2].embeddings())?;
let ce2 = (ce2 + self.point_embeddings[3].embeddings())?;
Tensor::cat(&[&ce1, &ce2], 1)
}
fn forward(
&self,
points: Option<(&Tensor, &Tensor)>,
boxes: Option<&Tensor>,
masks: Option<&Tensor>,
) -> Result<(Tensor, Tensor)> {
let se_points = match points {
Some((coords, labels)) => Some(self.embed_points(coords, labels, boxes.is_none())?),
None => None,
};
let se_boxes = match boxes {
Some(boxes) => Some(self.embed_boxes(boxes)?),
None => None,
};
let sparse_embeddings = match (se_points, se_boxes) {
(Some(se_points), Some(se_boxes)) => Tensor::cat(&[se_points, se_boxes], 1)?,
(Some(se_points), None) => se_points,
(None, Some(se_boxes)) => se_boxes,
(None, None) => Tensor::zeros(1, DType::F32, &candle::Device::Cpu)?,
};
let dense_embeddings = match masks {
None => {
let emb = self.no_mask_embed.embeddings();
emb.reshape((1, emb.elem_count(), 1, 1))?.expand((
1,
0,
self.image_embedding_size.0,
self.image_embedding_size.1,
))?
}
Some(masks) => self.embed_masks(masks)?,
};
Ok((sparse_embeddings, dense_embeddings))
}
}

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@ -0,0 +1,72 @@
use candle::{DType, IndexOp, Result, Tensor, D};
use candle_nn::{layer_norm, LayerNorm, Linear, Module, VarBuilder};
use crate::model_image_encoder::ImageEncoderViT;
use crate::model_mask_decoder::MaskDecoder;
use crate::model_prompt_encoder::PromptEncoder;
#[derive(Debug)]
pub struct Sam {
image_encoder: ImageEncoderViT,
prompt_encoder: PromptEncoder,
mask_decoder: MaskDecoder,
pixel_mean: Tensor,
pixel_std: Tensor,
}
impl Sam {
pub fn new(
encoder_embed_dim: usize,
encoder_depth: usize,
encoder_num_heads: usize,
encoder_global_attn_indexes: &[usize],
vb: VarBuilder,
) -> Result<Self> {
const PROMPT_EMBED_DIM: usize = 256;
const IMAGE_SIZE: usize = 1024;
const VIT_PATCH_SIZE: usize = 16;
let image_embedding_size = IMAGE_SIZE / VIT_PATCH_SIZE;
let image_encoder = ImageEncoderViT::new(
IMAGE_SIZE,
VIT_PATCH_SIZE,
3,
encoder_embed_dim,
encoder_depth,
encoder_num_heads,
PROMPT_EMBED_DIM,
/* qkv_bias */ true,
/* use_rel_pos */ true,
/* use_abs_pos */ true,
/* window_size */ 14,
/* global_attn_indexes */ encoder_global_attn_indexes,
vb.pp("image_encoder"),
)?;
let prompt_encoder = PromptEncoder::new(
PROMPT_EMBED_DIM,
(image_embedding_size, image_embedding_size),
(IMAGE_SIZE, IMAGE_SIZE),
16,
vb.pp("prompt_encoder"),
)?;
let mask_decoder = MaskDecoder::new(
PROMPT_EMBED_DIM,
/* num_multitask_outputs */ 3,
/* iou_head_depth */ 3,
/* iou_head_hidden_dim */ 256,
vb.pp("mask_decoder"),
)?;
let pixel_mean =
Tensor::new(&[123.675f32, 116.28, 103.53], vb.device())?.reshape((3, 1, 1))?;
let pixel_std =
Tensor::new(&[58.395f32, 57.12, 57.375], vb.device())?.reshape((3, 1, 1))?;
Ok(Self {
image_encoder,
prompt_encoder,
mask_decoder,
pixel_std,
pixel_mean,
})
}
}

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@ -75,3 +75,146 @@ struct TwoWayAttentionBlock {
cross_attn_image_to_token: Attention,
skip_first_layer_pe: bool,
}
impl TwoWayAttentionBlock {
fn new(
embedding_dim: usize,
num_heads: usize,
mlp_dim: usize,
skip_first_layer_pe: bool,
vb: VarBuilder,
) -> Result<Self> {
let self_attn = Attention::new(embedding_dim, num_heads, 1, vb.pp("self_attn"))?;
let norm1 = layer_norm(embedding_dim, 1e-5, vb.pp("norm1"))?;
let norm2 = layer_norm(embedding_dim, 1e-5, vb.pp("norm2"))?;
let norm3 = layer_norm(embedding_dim, 1e-5, vb.pp("norm3"))?;
let norm4 = layer_norm(embedding_dim, 1e-5, vb.pp("norm4"))?;
let self_attn = Attention::new(embedding_dim, num_heads, 1, vb.pp("self_attn"))?;
let cross_attn_token_to_image = Attention::new(
embedding_dim,
num_heads,
2,
vb.pp("cross_attn_token_to_image"),
)?;
let cross_attn_image_to_token = Attention::new(
embedding_dim,
num_heads,
2,
vb.pp("cross_attn_image_to_token"),
)?;
// TODO: use relu in this mlp
let mlp = crate::MlpBlock::new(embedding_dim, mlp_dim, vb.pp("mlp"))?;
Ok(Self {
self_attn,
norm1,
cross_attn_image_to_token,
norm2,
mlp,
norm3,
norm4,
cross_attn_token_to_image,
skip_first_layer_pe,
})
}
fn forward(
&self,
queries: &Tensor,
keys: &Tensor,
query_pe: &Tensor,
key_pe: &Tensor,
) -> Result<(Tensor, Tensor)> {
// Self attention block
let queries = if self.skip_first_layer_pe {
self.self_attn.forward(queries, keys, queries)?
} else {
let q = (queries + query_pe)?;
let attn_out = self.self_attn.forward(&q, &q, queries)?;
(queries + attn_out)?
};
let queries = self.norm1.forward(&queries)?;
// Cross attention block, tokens attending to image embedding
let q = (&queries + query_pe)?;
let k = (keys + key_pe)?;
let attn_out = self.cross_attn_token_to_image.forward(&q, &k, keys)?;
let queries = (&queries + attn_out)?;
let queries = self.norm2.forward(&queries)?;
// MLP block
let mlp_out = self.mlp.forward(&queries);
let queries = (queries + mlp_out)?;
let queries = self.norm3.forward(&queries)?;
// Cross attention block, image embedding attending to tokens
let q = (&queries + query_pe)?;
let k = (keys + key_pe)?;
let attn_out = self.cross_attn_image_to_token.forward(&k, &q, &queries)?;
let keys = (keys + attn_out)?;
let keys = self.norm4.forward(&keys)?;
Ok((queries, keys))
}
}
#[derive(Debug)]
pub struct TwoWayTransformer {
layers: Vec<TwoWayAttentionBlock>,
final_attn_token_to_image: Attention,
norm_final_attn: LayerNorm,
}
impl TwoWayTransformer {
pub fn new(
depth: usize,
embedding_dim: usize,
num_heads: usize,
mlp_dim: usize,
vb: VarBuilder,
) -> Result<Self> {
let vb_l = vb.pp("layers");
let mut layers = Vec::with_capacity(depth);
for i in 0..depth {
let layer =
TwoWayAttentionBlock::new(embedding_dim, num_heads, mlp_dim, i == 0, vb_l.pp(i))?;
layers.push(layer)
}
let final_attn_token_to_image = Attention::new(
embedding_dim,
num_heads,
2,
vb.pp("final_attn_token_to_image"),
)?;
let norm_final_attn = layer_norm(embedding_dim, 1e-5, vb.pp("norm_final_attn"))?;
Ok(Self {
layers,
final_attn_token_to_image,
norm_final_attn,
})
}
pub fn forward(
&self,
image_embedding: &Tensor,
image_pe: &Tensor,
point_embedding: &Tensor,
) -> Result<(Tensor, Tensor)> {
let (bs, c, h, w) = image_embedding.dims4()?;
let image_embedding = image_embedding.flatten_from(2)?.permute((0, 2, 1))?;
let image_pe = image_pe.flatten_from(2)?.permute((0, 2, 1))?;
let mut queries = point_embedding.clone();
let mut keys = image_embedding;
for layer in self.layers.iter() {
(queries, keys) = layer.forward(&queries, &keys, point_embedding, &image_pe)?
}
let q = (&queries + point_embedding)?;
let k = (&keys + image_pe)?;
let attn_out = self.final_attn_token_to_image.forward(&q, &k, &keys)?;
let queries = (queries + attn_out)?.apply(&self.norm_final_attn)?;
Ok((queries, keys))
}
}